6/24/2023 0 Comments Peptideshaker spectral library![]() Due to resource limitations, the maximum number of concurrent users is set to five and uploading and deleting of files is not supported. DemoĪ fully functional demo is available to test PeptideShaker Online. Start using PeptideShaker Onlineīefore using PeptideShaker Online, please read Start using PeptideShaker Online. Peptide spectrum matches (PSMs) are obtained by the assignment of the acquired MS/MS spectra to peptides, which are present in the database. Step-by-step instructions on how to deploy PeptideShaker Online on your own web server are available here: PeptideShaker Online Setup. Note that using a remote Galaxy server includes sending data over the internet which may not be recommended if the data is senstive or requires extra protection. We recommend that both the Galaxy server and the Tomcat server are located on the same machine or in the same network for both performace and security reasons. Galaxy server (local (recommended) or external) Option 1: Paste the URL of the workflow into the box labelled Archived Workflow URL.The setup of PeptideShaker Online requires access to the following: If you use PeptideShaker Online as part of a publication please include this reference.(Click on figure to see the full size version) PeptideShaker Online consists of two main components: Galaxy-based backend and a web application as a frontend. PeptideShaker Online is a user-friendly web-based framework for the identification of mass spectrometry-based proteomics data. ![]()
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